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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034402 through 18771 annotations produced 1 hits



(CG15084):

Annotation Number : CG15084
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034402
Gbrowse : chr2R:14738365-14739469 (+) // 100.0 //
Probeset : 1632748_at
Accessions : protein= NP_611383;, nucleotide= NM_137539;
FlyMine data for FBgn0034402.
BDGP gene expression has embryonic in situ data for CG15084: 13 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0034402 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034402 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 14 of 4 1.20Up
Head36 ± 24 of 4 0.80Down
Eye61 ± 44 of 4 1.34Up
Thoracicoabdominal ganglion61 ± 14 of 4 1.30Up
Salivary gland57 ± 74 of 4 1.26None
Crop51 ± 24 of 4 1.10None
Midgut25 ± 24 of 4 0.60Down
Tubule37 ± 34 of 4 0.80Down
Hindgut27 ± 14 of 4 0.60Down
Heart29 ± 14 of 4 0.65Down
Fat body24 ± 34 of 4 0.54Down
Ovary95 ± 14 of 4 2.10Up
Testis39 ± 14 of 4 0.80None
Male accessory glands43 ± 04 of 4 0.90None
Virgin spermatheca46 ± 24 of 4 1.00None
Mated spermatheca52 ± 74 of 4 1.14None
Adult carcass23 ± 14 of 4 0.50Down
Larval CNS67 ± 74 of 4 1.46Up
Larval Salivary gland32 ± 04 of 4 0.71Down
Larval midgut18 ± 14 of 4 0.39Down
Larval tubule33 ± 44 of 4 0.70None
Larval hindgut19 ± 14 of 4 0.43Down
Larval fat body36 ± 34 of 4 0.80None
Larval trachea35 ± 64 of 4 0.77Down
Larval carcass19 ± 04 of 4 0.43Down
S2 cells (growing)47 ± 04 of 4 1.02None
Whole fly46 ± 24 of 4

Looking for FBgn0034402. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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