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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034405 through 18771 annotations produced 1 hits



Juvenile hormone epoxide hydrolase 2 (Jheh2):

Annotation Number : CG15102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034405
Gbrowse : chr2R:14743262-14745443 (-) // 100.0 //
Probeset : 1627773_a_at
Accessions : protein= NP_611386; /// NP_788413;, nucleotide= NM_137542; /// NM_176233;
Pathway : 0005792 // microsome // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electro
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004301 // epoxide hydrolase activity // inferr
FlyMine data for FBgn0034405.
BDGP gene expression has embryonic in situ data for Jheh2: 21 pix of staining in 9 body parts.
Homophila reports that CG15102 is a close match (4e-50) to human gene EPHX1 (NP_000111), a gene associated with Diphenylhydantoin toxicity (1);Fetal hydantoin syndrome (1) (?);Hypercholanemia, familial, 607748 (3);{Preeclampsia, susceptibility to}, 189800 (3).
BioGrid reports that CG15102 interacts with CG7697 CG5064 .
TRiP has 2 RNAi stocks for FBgn0034405 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034405 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain652 ± 124 of 4 1.20Up
Head1217 ± 304 of 4 2.20Up
Eye1124 ± 894 of 4 2.06Up
Thoracicoabdominal ganglion724 ± 164 of 4 1.30Up
Salivary gland491 ± 334 of 4 0.90None
Crop2163 ± 274 of 4 4.00Up
Midgut513 ± 104 of 4 0.90None
Tubule1032 ± 874 of 4 1.90Up
Hindgut1391 ± 314 of 4 2.50Up
Heart1821 ± 594 of 4 3.33Up
Fat body1639 ± 1194 of 4 3.00Up
Ovary510 ± 64 of 4 0.90None
Testis237 ± 54 of 4 0.40Down
Male accessory glands718 ± 114 of 4 1.30Up
Virgin spermatheca692 ± 174 of 4 1.27Up
Mated spermatheca546 ± 664 of 4 1.00None
Adult carcass1654 ± 904 of 4 3.00Up
Larval CNS557 ± 334 of 4 1.02None
Larval Salivary gland146 ± 74 of 4 0.27Down
Larval midgut548 ± 274 of 4 1.00None
Larval tubule521 ± 64 of 4 1.00None
Larval hindgut552 ± 314 of 4 1.01None
Larval fat body1007 ± 1344 of 4 1.80Up
Larval trachea1132 ± 544 of 4 2.07Up
Larval carcass457 ± 274 of 4 0.84Down
S2 cells (growing)820 ± 154 of 4 1.50Up
Whole fly546 ± 144 of 4

Looking for FBgn0034405. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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