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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034406 through 18771 annotations produced 1 hits



Juvenile hormone epoxide hydrolase 3 (Jheh3):

Annotation Number : CG15106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034406
Gbrowse : chr2R:14747870-14749576 (-) // 100.0 //
Probeset : 1625587_at
Accessions : protein= NP_611387;, nucleotide= NM_137543;
Pathway : 0005792 // microsome // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electro
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004301 // epoxide hydrolase activity // inferr
FlyMine data for FBgn0034406.
Homophila reports that CG15106 is a close match (2e-83) to human gene EPHX1 (NP_000111), a gene associated with Diphenylhydantoin toxicity (1);Fetal hydantoin syndrome (1) (?);Hypercholanemia, familial, 607748 (3);{Preeclampsia, susceptibility to}, 189800 (3).
VDRC has 2 RNAi stocks for FBgn0034406 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain216 74 of 4 1.30None
Head178 124 of 4 1.10None
Eye192 94 of 4 1.16None
Thoracicoabdominal ganglion211 94 of 4 1.30None
Salivary gland11 30 of 4 0.07Down
Crop21 14 of 4 0.10Down
Midgut1814 744 of 410.90Up
Tubule501 244 of 4 3.00Up
Hindgut207 104 of 4 1.20None
Heart88 104 of 4 0.53Down
Fat body66 84 of 4 0.40Down
Ovary39 14 of 4 0.20Down
Testis29 24 of 4 0.20Down
Male accessory glands12 30 of 4 0.10Down
Virgin spermatheca259 194 of 4 1.56Up
Mated spermatheca260 224 of 4 1.57Up
Adult carcass100 144 of 4 0.60None
Larval CNS156 214 of 4 0.94None
Larval Salivary gland10 30 of 4 0.06Down
Larval midgut1749 854 of 410.54Up
Larval tubule214 134 of 4 1.30None
Larval hindgut174 134 of 4 1.05None
Larval fat body490 684 of 4 3.00Up
Larval trachea866 1114 of 4 5.22Up
Larval carcass120 124 of 4 0.73None
S2 cells (growing)11 10 of 4 0.07Down
Whole fly166 224 of 4

Looking for FBgn0034406. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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