Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034408 through 18771 annotations produced 2 hits



serrano (sano):

Annotation Number : CG12758
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034408
Gbrowse : chr2R:14765898-14846415 (+) // 100.0 //
Probeset : 1627971_s_at
Accessions : protein= NP_001137706; /// NP_523788; /// NP_725838; /// NP_725839; /// NP_725840;, nucleotide= NM_001144234; /// NM_079064; /// NM_166314; /// NM_166315; /// NM_166316;
Pathway : open tracheal system // inferred from mutant phenotype /// 0042067 // establishment of ommatidial planar polarity // in
Interpro : 0045179 // apical cortex // inferred from direct assay
FlyMine data for FBgn0034408.
BDGP gene expression has embryonic in situ data for sano: 45 pix of staining in 10 body parts.
BioGrid reports that CG12758 interacts with CG3427 .
VDRC has 2 RNAi stocks for FBgn0034408 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain101 24 of 4 4.30Up
Head84 74 of 4 3.60Up
Eye403 384 of 417.09Up
Thoracicoabdominal ganglion104 104 of 4 4.40Up
Salivary gland36 64 of 4 1.54None
Crop39 24 of 4 1.70Up
Midgut18 14 of 4 0.80None
Tubule15 03 of 4 0.70Down
Hindgut50 24 of 4 2.10Up
Heart34 24 of 4 1.45Up
Fat body34 114 of 4 1.45None
Ovary8 12 of 4 0.30Down
Testis21 14 of 4 0.90None
Male accessory glands78 54 of 4 3.30Up
Virgin spermatheca22 24 of 4 0.97None
Mated spermatheca31 74 of 4 1.32None
Adult carcass72 64 of 4 3.10Up
Larval CNS49 64 of 4 2.11Up
Larval Salivary gland17 14 of 4 0.75None
Larval midgut16 14 of 4 0.71Down
Larval tubule8 02 of 4 0.30Down
Larval hindgut24 24 of 4 1.02None
Larval fat body11 24 of 4 0.50Down
Larval trachea362 274 of 415.37Up
Larval carcass57 64 of 4 2.45Up
S2 cells (growing)12 14 of 4 0.52Down
Whole fly23 24 of 4



serrano (sano):

Annotation Number : S.C2R001979
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034408
Gbrowse : chr2R:14832897-14842951 (+) // 100.0 //
Probeset : 1633623_s_at
Accessions : protein= NP_001137706; /// NP_523788; /// NP_725838; /// NP_725839; /// NP_725840;, nucleotide= NM_001144234; /// NM_079064; /// NM_166314; /// NM_166315; /// NM_166316;
Pathway : open tracheal system // inferred from mutant phenotype /// 0042067 // establishment of ommatidial planar polarity // in
Interpro : 0045179 // apical cortex // inferred from direct assay
FlyMine data for FBgn0034408.
BDGP gene expression has embryonic in situ data for sano: 45 pix of staining in 10 body parts.
VDRC has 2 RNAi stocks for FBgn0034408 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 00 of 4 1.80None
Head5 20 of 4 1.00None
Eye1 00 of 4 0.21None
Thoracicoabdominal ganglion8 10 of 4 1.60None
Salivary gland12 20 of 4 2.42None
Crop6 20 of 4 1.30None
Midgut2 00 of 4 0.50None
Tubule7 00 of 4 1.50Up
Hindgut5 10 of 4 1.00None
Heart6 00 of 4 1.30None
Fat body8 60 of 4 1.63None
Ovary3 10 of 4 0.60None
Testis0 00 of 4 0.20None
Male accessory glands7 20 of 4 1.40None
Virgin spermatheca6 10 of 4 1.34None
Mated spermatheca2 10 of 4 0.57None
Adult carcass14 30 of 4 2.80Up
Larval CNS8 30 of 4 1.71None
Larval Salivary gland4 20 of 4 0.92None
Larval midgut3 00 of 4 0.62None
Larval tubule3 10 of 4 0.70None
Larval hindgut7 20 of 4 1.37None
Larval fat body1 00 of 4 0.30None
Larval trachea4 30 of 4 0.95None
Larval carcass4 00 of 4 0.96None
S2 cells (growing)4 10 of 4 0.96None
Whole fly5 10 of 4

Looking for FBgn0034408. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime