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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034413 through 18771 annotations produced 2 hits



(CG15115):

Annotation Number : Stencil:2R:14107356:14099688:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034413
Gbrowse : chr2R:14923473-14931141 (-) // 100.0 //
Probeset : 1638210_at
Accessions : protein= NP_611391;, nucleotide= NM_137547;
FlyMine data for FBgn0034413.
VDRC has 3 RNAi stocks for FBgn0034413 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head2 ± 00 of 4 0.70None
Eye3 ± 11 of 4 1.12None
Thoracicoabdominal ganglion1 ± 00 of 4 0.30None
Salivary gland6 ± 20 of 4 1.84None
Crop3 ± 10 of 4 1.00None
Midgut2 ± 00 of 4 0.70None
Tubule3 ± 00 of 4 0.90None
Hindgut1 ± 00 of 4 0.30None
Heart1 ± 00 of 4 0.38None
Fat body8 ± 21 of 4 2.56Up
Ovary1 ± 00 of 4 0.50None
Testis1 ± 00 of 4 0.50None
Male accessory glands5 ± 10 of 4 1.50None
Virgin spermatheca2 ± 10 of 4 0.72None
Mated spermatheca1 ± 00 of 4 0.33None
Adult carcass1 ± 00 of 4 0.40None
Larval CNS1 ± 00 of 4 0.39None
Larval Salivary gland2 ± 11 of 4 0.83None
Larval midgut2 ± 00 of 4 0.70None
Larval tubule9 ± 31 of 4 2.70None
Larval hindgut0 ± 00 of 4 0.23None
Larval fat body7 ± 21 of 4 2.10None
Larval trachea2 ± 20 of 4 0.59None
Larval carcass1 ± 00 of 4 0.29None
S2 cells (growing)0 ± 00 of 4 0.14None
Whole fly3 ± 10 of 4



(CG15115):

Annotation Number : CG15115
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034413
Gbrowse : chr2R:14922996-14923368 (-) // 100.0 //
Probeset : 1637075_at
Accessions : protein= NP_611391;, nucleotide= NM_137547;
FlyMine data for FBgn0034413.
VDRC has 3 RNAi stocks for FBgn0034413 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.40None
Head3 ± 20 of 4 0.70None
Eye6 ± 21 of 4 1.32None
Thoracicoabdominal ganglion6 ± 10 of 4 1.20None
Salivary gland22 ± 31 of 4 4.31Up
Crop6 ± 11 of 4 1.20None
Midgut12 ± 23 of 4 2.40Up
Tubule7 ± 00 of 4 1.30Up
Hindgut7 ± 11 of 4 1.40None
Heart6 ± 12 of 4 1.20None
Fat body9 ± 32 of 4 1.79None
Ovary3 ± 00 of 4 0.60None
Testis3 ± 10 of 4 0.60None
Male accessory glands7 ± 20 of 4 1.40None
Virgin spermatheca7 ± 21 of 4 1.48None
Mated spermatheca5 ± 10 of 4 1.12None
Adult carcass7 ± 10 of 4 1.40None
Larval CNS6 ± 12 of 4 1.20None
Larval Salivary gland6 ± 22 of 4 1.24None
Larval midgut7 ± 01 of 4 1.50None
Larval tubule16 ± 14 of 4 3.10Up
Larval hindgut3 ± 10 of 4 0.56None
Larval fat body9 ± 30 of 4 1.80None
Larval trachea7 ± 32 of 4 1.43None
Larval carcass7 ± 11 of 4 1.34None
S2 cells (growing)3 ± 00 of 4 0.67None
Whole fly5 ± 10 of 4

Looking for FBgn0034413. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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