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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034415 through 18771 annotations produced 1 hits



(CG15116):

Annotation Number : CG15116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034415
Gbrowse : chr2R:14942783-14943319 (-) // 100.0 //
Probeset : 1633617_at
Accessions : protein= NP_611393;, nucleotide= NM_137549;
Interpro : 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity //
FlyMine data for FBgn0034415.
Homophila reports that CG15116 is a close match (2e-17) to human gene GPX1 (NP_000572), a gene associated with Hemolytic anemia due to glutathione peroxidase deficiency (1).
BioGrid reports that CG15116 interacts with CG18186 .
VDRC has 3 RNAi stocks for FBgn0034415 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.10Down
Salivary gland16 ± 30 of 4 0.34Down
Crop3 ± 10 of 4 0.10Down
Midgut8 ± 30 of 4 0.20Down
Tubule3 ± 00 of 4 0.10Down
Hindgut7 ± 20 of 4 0.10Down
Heart0 ± 00 of 4 0.02Down
Fat body9 ± 80 of 4 0.20Down
Ovary1 ± 00 of 4 0.00Down
Testis6 ± 22 of 4 0.10Down
Male accessory glands3929 ± 1984 of 483.00Up
Virgin spermatheca4 ± 10 of 4 0.09Down
Mated spermatheca5 ± 10 of 4 0.11Down
Adult carcass23 ± 51 of 4 0.50None
Larval CNS1 ± 00 of 4 0.02Down
Larval Salivary gland15 ± 20 of 4 0.32Down
Larval midgut11 ± 31 of 4 0.25Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.05Down
Larval fat body13 ± 40 of 4 0.30Down
Larval trachea2 ± 10 of 4 0.06Down
Larval carcass6 ± 10 of 4 0.14Down
S2 cells (growing)9 ± 20 of 4 0.20Down
Whole fly47 ± 94 of 4

Looking for FBgn0034415. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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