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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034416 through 18771 annotations produced 1 hits


(CG15109):

Annotation Number : CG15109
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034416
Gbrowse : chr2R:14946925-14948575 (+) // 100.0 //
Probeset : 1640525_a_at
Accessions : protein= NP_001014534; /// NP_611394; /// NP_725847;, nucleotide= NM_001014534; /// NM_137550; /// NM_166320;
FlyMine data for FBgn0034416.
BDGP gene expression has embryonic in situ data for CG15109: 8 pix of staining in 1 body parts.
BioGrid reports that CG15109 interacts with CG15623 CG5717 CG7611 CG8725 CG17342 CG17870 CG18112 CG2052 CG2168 CG2238 CG30437 CG3052 CG3195 CG32159 CG32446 CG32570 CG32575 CG3661 CG3731 CG4115 CG4147 CG4303 CG5105 CG5201 CG5271 CG5642 CG5701 CG6094 CG7434 CG7808 CG7925 CG7937 CG8286 CG8409 CG8709 CG8813 CG9075 CG9258 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 .
VDRC has 2 RNAi stocks for FBgn0034416 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland5 ± 30 of 4 0.04Down
Crop1 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body0 ± 00 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis2025 ± 574 of 416.50Up
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca0 ± 00 of 4 0.01Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body314 ± 1694 of 4 2.60None
Larval trachea14 ± 181 of 4 0.12Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly122 ± 94 of 4

Looking for FBgn0034416. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime