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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034417 through 18771 annotations produced 1 hits


Annotation Number : CG15117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034417
Gbrowse : chr2R:15009734-15016746 (-) // 100.0 //
Probeset : 1624466_a_at
Accessions : protein= NP_001014535; /// NP_611395; /// NP_725851;, nucleotide= NM_001014535; /// NM_137551; /// NM_166324;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0034417.
BDGP gene expression has embryonic in situ data for CG15117: 33 pix of staining in 8 body parts.
Homophila reports that CG15117 is a close match (1e-147) to human gene GUSB;MPS7 (NP_000172), a gene associated with Mucopolysaccharidosis VII, 253220 (3).
TRiP has 1 RNAi stocks for FBgn0034417 available for purchase.
VDRC has 4 RNAi stocks for FBgn0034417 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 24 of 4 0.40Down
Head50 44 of 4 0.80None
Eye47 54 of 4 0.74None
Thoracicoabdominal ganglion16 14 of 4 0.30Down
Salivary gland68 104 of 4 1.06None
Crop26 14 of 4 0.40Down
Midgut180 124 of 4 2.80Up
Tubule100 44 of 4 1.60Up
Hindgut54 14 of 4 0.90None
Heart34 14 of 4 0.54Down
Fat body41 94 of 4 0.64Down
Ovary10 14 of 4 0.20Down
Testis247 74 of 4 3.80Up
Male accessory glands2663 1994 of 441.30Up
Virgin spermatheca47 74 of 4 0.73None
Mated spermatheca42 34 of 4 0.65Down
Adult carcass41 24 of 4 0.60Down
Larval CNS13 34 of 4 0.20Down
Larval Salivary gland35 44 of 4 0.54Down
Larval midgut265 144 of 4 4.11Up
Larval tubule78 64 of 4 1.20None
Larval hindgut128 84 of 4 1.99Up
Larval fat body7 10 of 4 0.10Down
Larval trachea13 32 of 4 0.21Down
Larval carcass14 11 of 4 0.23Down
S2 cells (growing)73 54 of 4 1.13None
Whole fly64 64 of 4

Looking for FBgn0034417. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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