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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034422 through 18771 annotations produced 1 hits



Gene 3 (CG7137):

Annotation Number : CG7137
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034422
Gbrowse : chr2R:15114834-15116122 (+) // 100.0 //
Probeset : 1638539_at
Accessions : protein= NP_611400;, nucleotide= NM_137556;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005677 // chromatin silencing complex // inferred from se
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infe
FlyMine data for FBgn0034422.
VDRC has 1 RNAi stocks for FBgn0034422 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 04 of 4 0.40Down
Head39 ± 24 of 4 0.40Down
Eye22 ± 14 of 4 0.24Down
Thoracicoabdominal ganglion63 ± 24 of 4 0.70Down
Salivary gland62 ± 34 of 4 0.66Down
Crop31 ± 14 of 4 0.30Down
Midgut40 ± 24 of 4 0.40Down
Tubule36 ± 44 of 4 0.40Down
Hindgut31 ± 24 of 4 0.30Down
Heart22 ± 14 of 4 0.23Down
Fat body39 ± 14 of 4 0.42Down
Ovary144 ± 34 of 4 1.50Up
Testis135 ± 34 of 4 1.40Up
Male accessory glands90 ± 64 of 4 1.00None
Virgin spermatheca38 ± 24 of 4 0.40Down
Mated spermatheca61 ± 34 of 4 0.65Down
Adult carcass35 ± 34 of 4 0.40Down
Larval CNS105 ± 54 of 4 1.11None
Larval Salivary gland106 ± 74 of 4 1.12None
Larval midgut36 ± 31 of 4 0.38Down
Larval tubule24 ± 14 of 4 0.30Down
Larval hindgut56 ± 24 of 4 0.59Down
Larval fat body52 ± 74 of 4 0.60Down
Larval trachea62 ± 124 of 4 0.65Down
Larval carcass62 ± 114 of 4 0.66None
S2 cells (growing)89 ± 14 of 4 0.94None
Whole fly95 ± 84 of 4

Looking for FBgn0034422. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime