Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034423 through 18771 annotations produced 1 hits


Gene 4 (CG7229):

Annotation Number : CG7229
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034423
Gbrowse : chr2R:15147418-15149739 (+) // 99.78 //
Probeset : 1623992_at
Accessions : protein= NP_611401;, nucleotide= NM_137557;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
FlyMine data for FBgn0034423.
BDGP gene expression has embryonic in situ data for CG7229: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0034423 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034423 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.13Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland2 ± 00 of 4 0.12Down
Crop2 ± 10 of 4 0.20Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.08Down
Fat body1 ± 20 of 4 0.12Down
Ovary0 ± 00 of 4 0.00Down
Testis252 ± 94 of 416.00Up
Male accessory glands3 ± 20 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.22Down
Mated spermatheca3 ± 10 of 4 0.19Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS4 ± 10 of 4 0.29Down
Larval Salivary gland4 ± 10 of 4 0.27Down
Larval midgut1 ± 00 of 4 0.10Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.07Down
Larval fat body57 ± 273 of 4 3.60None
Larval trachea3 ± 41 of 4 0.21Down
Larval carcass1 ± 00 of 4 0.09Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly15 ± 14 of 4

Looking for FBgn0034423. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime