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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034433 through 18771 annotations produced 1 hits



endophilin (endoB):

Annotation Number : CG9834
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034433
Gbrowse : chr2R:15194944-15198197 (-) // 100.0 //
Probeset : 1627765_a_at
Accessions : protein= NP_001097375; /// NP_001097376; /// NP_611410; /// NP_725873;, nucleotide= NM_001103905; /// NM_001103906; /// NM_137566; /// NM_166340;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0034433.
TRiP has 2 RNAi stocks for FBgn0034433 available for purchase.
VDRC has 4 RNAi stocks for FBgn0034433 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain232 84 of 4 5.50Up
Head107 104 of 4 2.50Up
Eye89 44 of 4 2.11Up
Thoracicoabdominal ganglion280 144 of 4 6.60Up
Salivary gland6 31 of 4 0.15Down
Crop21 24 of 4 0.50Down
Midgut8 13 of 4 0.20Down
Tubule3 00 of 4 0.10Down
Hindgut12 14 of 4 0.30Down
Heart11 23 of 4 0.27Down
Fat body18 14 of 4 0.42Down
Ovary127 44 of 4 3.00Up
Testis7 13 of 4 0.20Down
Male accessory glands10 32 of 4 0.20Down
Virgin spermatheca7 13 of 4 0.17Down
Mated spermatheca6 03 of 4 0.14Down
Adult carcass16 22 of 4 0.40Down
Larval CNS132 94 of 4 3.13Up
Larval Salivary gland8 12 of 4 0.19Down
Larval midgut5 12 of 4 0.13Down
Larval tubule7 12 of 4 0.20Down
Larval hindgut12 04 of 4 0.30Down
Larval fat body12 20 of 4 0.30Down
Larval trachea20 24 of 4 0.48Down
Larval carcass19 34 of 4 0.47Down
S2 cells (growing)42 34 of 4 1.00None
Whole fly42 44 of 4

Looking for FBgn0034433. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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