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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034435 through 18771 annotations produced 1 hits



(CG9975):

Annotation Number : CG9975
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034435
Gbrowse : chr2R:15229313-15233067 (+) // 100.0 //
Probeset : 1640229_at
Accessions : protein= NP_611412;, nucleotide= NM_137568;
FlyMine data for FBgn0034435.
VDRC has 3 RNAi stocks for FBgn0034435 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye2 00 of 4 0.01Down
Thoracicoabdominal ganglion4 11 of 4 0.00Down
Salivary gland14 12 of 4 0.06Down
Crop6 21 of 4 0.00Down
Midgut3 00 of 4 0.00Down
Tubule5 11 of 4 0.00Down
Hindgut5 10 of 4 0.00Down
Heart2 01 of 4 0.01Down
Fat body15 73 of 4 0.06Down
Ovary2 00 of 4 0.00Down
Testis2666 1464 of 411.10Up
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca13 04 of 4 0.06Down
Mated spermatheca18 73 of 4 0.08Down
Adult carcass11 31 of 4 0.00Down
Larval CNS8 24 of 4 0.04Down
Larval Salivary gland4 10 of 4 0.02Down
Larval midgut3 11 of 4 0.01Down
Larval tubule4 00 of 4 0.00Down
Larval hindgut4 11 of 4 0.02Down
Larval fat body298 1554 of 4 1.20None
Larval trachea16 223 of 4 0.07Down
Larval carcass2 10 of 4 0.01Down
S2 cells (growing)2 10 of 4 0.01Down
Whole fly240 174 of 4

Looking for FBgn0034435. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime