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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034436 through 18771 annotations produced 1 hits



(CG11961):

Annotation Number : CG11961
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034436
Gbrowse : chr2R:15245235-15249878 (+) // 100.0 //
Probeset : 1637042_a_at
Accessions : protein= NP_611413; /// NP_725876;, nucleotide= NM_137569; /// NM_166342;
Interpro : 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from
FlyMine data for FBgn0034436.
BDGP gene expression has embryonic in situ data for CG11961: 16 pix of staining in 3 body parts.
BioGrid reports that CG11961 interacts with CG3858 CG8368 CG8893 CG9027 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 44 of 4 0.40Down
Head145 154 of 4 1.00None
Eye164 54 of 4 1.18None
Thoracicoabdominal ganglion46 14 of 4 0.30Down
Salivary gland43 43 of 4 0.31Down
Crop447 124 of 4 3.20Up
Midgut1427 254 of 410.20Up
Tubule18 42 of 4 0.10Down
Hindgut296 104 of 4 2.10Up
Heart103 24 of 4 0.74None
Fat body184 384 of 4 1.32None
Ovary17 04 of 4 0.10Down
Testis29 34 of 4 0.20Down
Male accessory glands304 84 of 4 2.20Up
Virgin spermatheca243 64 of 4 1.73Up
Mated spermatheca261 154 of 4 1.87Up
Adult carcass77 74 of 4 0.60None
Larval CNS109 104 of 4 0.78None
Larval Salivary gland17 33 of 4 0.13Down
Larval midgut2543 2254 of 418.16Up
Larval tubule13 01 of 4 0.10Down
Larval hindgut274 194 of 4 1.96Up
Larval fat body84 134 of 4 0.60None
Larval trachea108 164 of 4 0.78None
Larval carcass98 44 of 4 0.70None
S2 cells (growing)519 84 of 4 3.71Up
Whole fly140 214 of 4

Looking for FBgn0034436. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime