FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034439 through 18771 annotations produced 1 hits

(CG10062):

Annotation Number : CG10062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034439
Gbrowse : chr2R:15263229-15267682 (+) // 100.0 //
Probeset : 1631555_at
Accessions : protein= NP_001163202; /// NP_611416;, nucleotide= NM_001169731; /// NM_137572;
Interpro : 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from
FlyMine data for FBgn0034439.
BDGP gene expression has embryonic in situ data for CG10062: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034439 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 1	2 of 4	0.20	Down
Head	148 ± 7	4 of 4	2.80	Up
Eye	301 ± 6	4 of 4	5.61	Up
Thoracicoabdominal ganglion	8 ± 0	0 of 4	0.20	Down
Salivary gland	18 ± 2	1 of 4	0.33	Down
Crop	832 ± 61	4 of 4	15.50	Up
Midgut	320 ± 18	4 of 4	6.00	Up
Tubule	12 ± 4	1 of 4	0.20	Down
Hindgut	59 ± 5	4 of 4	1.10	None
Heart	2 ± 0	0 of 4	0.05	Down
Fat body	5 ± 4	0 of 4	0.10	Down
Ovary	7 ± 1	1 of 4	0.10	Down
Testis	161 ± 5	4 of 4	3.00	Up
Male accessory glands	16 ± 2	0 of 4	0.30	Down
Virgin spermatheca	7 ± 2	0 of 4	0.13	Down
Mated spermatheca	4 ± 1	0 of 4	0.09	Down
Adult carcass	24 ± 2	2 of 4	0.40	Down
Larval CNS	1 ± 1	0 of 4	0.03	Down
Larval Salivary gland	3 ± 0	0 of 4	0.07	Down
Larval midgut	324 ± 59	4 of 4	6.04	Up
Larval tubule	8 ± 2	0 of 4	0.20	Down
Larval hindgut	10 ± 1	0 of 4	0.20	Down
Larval fat body	18 ± 3	1 of 4	0.30	Down
Larval trachea	10 ± 6	1 of 4	0.19	Down
Larval carcass	25 ± 3	4 of 4	0.47	Down
S2 cells (growing)	11 ± 1	0 of 4	0.22	Down
Whole fly	53 ± 6	4 of 4

Looking for FBgn0034439. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720