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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034442 through 18771 annotations produced 1 hits



(CG11257):

Annotation Number : CG11257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034442
Gbrowse : chr2R:15277685-15279348 (+) // 100.0 //
Probeset : 1631483_at
Accessions : protein= NP_611419;, nucleotide= NM_137575;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from e
FlyMine data for FBgn0034442.
VDRC has 2 RNAi stocks for FBgn0034442 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 14 of 4 0.90None
Head23 ± 14 of 4 0.60Down
Eye28 ± 04 of 4 0.79None
Thoracicoabdominal ganglion19 ± 02 of 4 0.50Down
Salivary gland64 ± 24 of 4 1.77Up
Crop37 ± 24 of 4 1.00None
Midgut38 ± 34 of 4 1.10None
Tubule15 ± 13 of 4 0.40Down
Hindgut31 ± 14 of 4 0.90None
Heart26 ± 24 of 4 0.72None
Fat body27 ± 64 of 4 0.76None
Ovary86 ± 24 of 4 2.40Up
Testis34 ± 14 of 4 0.90None
Male accessory glands33 ± 14 of 4 0.90None
Virgin spermatheca18 ± 23 of 4 0.51Down
Mated spermatheca17 ± 23 of 4 0.48Down
Adult carcass25 ± 42 of 4 0.70None
Larval CNS36 ± 14 of 4 1.01None
Larval Salivary gland52 ± 24 of 4 1.43Up
Larval midgut36 ± 33 of 4 0.99None
Larval tubule34 ± 24 of 4 0.90None
Larval hindgut26 ± 24 of 4 0.73None
Larval fat body32 ± 22 of 4 0.90None
Larval trachea50 ± 34 of 4 1.40Up
Larval carcass37 ± 34 of 4 1.02None
S2 cells (growing)25 ± 04 of 4 0.70Down
Whole fly36 ± 34 of 4

Looking for FBgn0034442. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime