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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034446 through 18771 annotations produced 1 hits



(CG7735):

Annotation Number : CG7735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034446
Gbrowse : chr2R:15331721-15332501 (+) // 100.0 //
Probeset : 1624234_at
Accessions : protein= NP_611421;, nucleotide= NM_137577;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0034446.
Homophila reports that CG7735 is a close match (3e-16) to human gene CMRD;SAR1B;SARA2 (NP_057187), a gene associated with Anderson disease, 607689 (3);Chylomicron retention disease, 246700 (3).
VDRC has 3 RNAi stocks for FBgn0034446 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 1.40None
Head33 44 of 413.00Up
Eye23 24 of 4 8.97Up
Thoracicoabdominal ganglion7 10 of 4 2.70None
Salivary gland2 00 of 4 1.04None
Crop4 10 of 4 1.60None
Midgut2 10 of 4 1.00None
Tubule2 00 of 4 0.90None
Hindgut1 00 of 4 0.40None
Heart2 00 of 4 1.12None
Fat body7 50 of 4 2.93None
Ovary0 00 of 4 0.40None
Testis2 10 of 4 1.00None
Male accessory glands5 20 of 4 2.00None
Virgin spermatheca3 10 of 4 1.31None
Mated spermatheca3 10 of 4 1.25None
Adult carcass6 20 of 4 2.60None
Larval CNS2 10 of 4 1.05None
Larval Salivary gland1 00 of 4 0.72None
Larval midgut1 00 of 4 0.47None
Larval tubule0 00 of 4 0.30None
Larval hindgut1 00 of 4 0.57None
Larval fat body2 00 of 4 1.00None
Larval trachea5 30 of 4 2.11None
Larval carcass5 10 of 4 2.11None
S2 cells (growing)2 10 of 4 0.88None
Whole fly2 00 of 4

Looking for FBgn0034446. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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