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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034454 through 18771 annotations produced 1 hits



(CG15120):

Annotation Number : CG15120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034454
Gbrowse : chr2R:15385258-15387878 (+) // 100.0 //
Probeset : 1622894_at
Accessions : protein= NP_611428;, nucleotide= NM_137584;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0034454.
BioGrid reports that CG15120 interacts with CG4394 CG9036 CG9426 .
VDRC has 5 RNAi stocks for FBgn0034454 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.20Down
Head35 14 of 4 1.30None
Eye18 20 of 4 0.70None
Thoracicoabdominal ganglion6 30 of 4 0.20Down
Salivary gland16 50 of 4 0.62None
Crop17 20 of 4 0.70None
Midgut8 00 of 4 0.30None
Tubule4 00 of 4 0.20Down
Hindgut20 40 of 4 0.80None
Heart87 54 of 4 3.25Up
Fat body187 194 of 4 6.99Up
Ovary7 10 of 4 0.30None
Testis7 20 of 4 0.30None
Male accessory glands8 20 of 4 0.30None
Virgin spermatheca192 144 of 4 7.17Up
Mated spermatheca80 164 of 4 2.99Up
Adult carcass113 94 of 4 4.20Up
Larval CNS4 30 of 4 0.18Down
Larval Salivary gland5 10 of 4 0.19Down
Larval midgut7 30 of 4 0.27Down
Larval tubule5 10 of 4 0.20Down
Larval hindgut7 00 of 4 0.28None
Larval fat body31 40 of 4 1.20None
Larval trachea1 10 of 4 0.04Down
Larval carcass7 20 of 4 0.28None
S2 cells (growing)4 10 of 4 0.18Down
Whole fly26 62 of 4

Looking for FBgn0034454. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime