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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034455 through 18771 annotations produced 1 hits



(CG11007):

Annotation Number : CG11007
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034455
Gbrowse : chr2R:15390583-15391773 (+) // 100.0 //
Probeset : 1630991_at
Accessions : protein= NP_611429;, nucleotide= NM_137585;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0034455.
BioGrid reports that CG11007 interacts with CG12081 CG6608 CG31450 .
VDRC has 1 RNAi stocks for FBgn0034455 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain145 ± 54 of 4 0.80None
Head99 ± 114 of 4 0.60Down
Eye121 ± 74 of 4 0.68Down
Thoracicoabdominal ganglion172 ± 74 of 4 1.00None
Salivary gland91 ± 54 of 4 0.52Down
Crop115 ± 64 of 4 0.60Down
Midgut73 ± 24 of 4 0.40Down
Tubule96 ± 44 of 4 0.50Down
Hindgut116 ± 64 of 4 0.70Down
Heart171 ± 154 of 4 0.97None
Fat body94 ± 74 of 4 0.54Down
Ovary349 ± 44 of 4 2.00Up
Testis251 ± 114 of 4 1.40Up
Male accessory glands168 ± 124 of 4 0.90None
Virgin spermatheca34 ± 24 of 4 0.19Down
Mated spermatheca44 ± 44 of 4 0.25Down
Adult carcass88 ± 54 of 4 0.50Down
Larval CNS197 ± 54 of 4 1.12None
Larval Salivary gland83 ± 34 of 4 0.47Down
Larval midgut52 ± 34 of 4 0.30Down
Larval tubule137 ± 44 of 4 0.80Down
Larval hindgut99 ± 34 of 4 0.56Down
Larval fat body67 ± 144 of 4 0.40Down
Larval trachea129 ± 174 of 4 0.73Down
Larval carcass78 ± 54 of 4 0.44Down
S2 cells (growing)192 ± 54 of 4 1.09None
Whole fly177 ± 124 of 4

Looking for FBgn0034455. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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