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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034456 through 18771 annotations produced 1 hits

CG15121 (Ir56b):

Annotation Number : CG15121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034456
Gbrowse : chr2R:15395671-15396949 (+) // 100.0 //
Probeset : 1638026_at
Accessions : protein= NP_611430;, nucleotide= NM_137586;
FlyMine data for FBgn0034456.
BioGrid reports that CG15121 interacts with CG2238 .
VDRC has 2 RNAi stocks for FBgn0034456 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.10None
Head2 10 of 4 2.50None
Eye2 00 of 4 2.85Up
Thoracicoabdominal ganglion3 10 of 4 3.10None
Salivary gland5 10 of 4 5.44None
Crop1 00 of 4 1.60None
Midgut3 10 of 4 3.60None
Tubule4 00 of 4 4.10Up
Hindgut0 00 of 4 0.80None
Heart2 10 of 4 2.31None
Fat body1 20 of 4 1.92None
Ovary0 00 of 4 0.80None
Testis1 00 of 4 1.90None
Male accessory glands5 20 of 4 5.70None
Virgin spermatheca1 00 of 4 1.67None
Mated spermatheca2 00 of 4 2.36None
Adult carcass4 20 of 4 4.20None
Larval CNS0 00 of 4 1.00None
Larval Salivary gland4 10 of 4 4.62None
Larval midgut5 10 of 4 5.28Up
Larval tubule3 10 of 4 3.80None
Larval hindgut1 00 of 4 0.97None
Larval fat body2 10 of 4 2.80None
Larval trachea1 10 of 4 1.13None
Larval carcass4 10 of 4 4.23None
S2 cells (growing)1 00 of 4 1.82None
Whole fly1 00 of 4

Looking for FBgn0034456. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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