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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034458 through 18771 annotations produced 1 hits



CG15904 (Ir56d):

Annotation Number : CG15904
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034458
Gbrowse : chr2R:15399177-15401076 (-) // 100.0 //
Probeset : 1628136_at
Accessions : protein= NP_611432;, nucleotide= NM_137588;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0034458.
VDRC has 1 RNAi stocks for FBgn0034458 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 2.00None
Head1 ± 00 of 4 0.80None
Eye1 ± 00 of 4 0.73None
Thoracicoabdominal ganglion2 ± 00 of 4 1.20None
Salivary gland9 ± 40 of 4 5.34None
Crop1 ± 00 of 4 0.90None
Midgut3 ± 20 of 4 2.10None
Tubule2 ± 00 of 4 1.30None
Hindgut1 ± 00 of 4 1.10None
Heart1 ± 00 of 4 0.62None
Fat body1 ± 00 of 4 0.86None
Ovary0 ± 00 of 4 0.40None
Testis0 ± 00 of 4 0.40None
Male accessory glands2 ± 00 of 4 1.10None
Virgin spermatheca1 ± 00 of 4 0.71None
Mated spermatheca1 ± 00 of 4 0.64None
Adult carcass5 ± 20 of 4 3.00None
Larval CNS1 ± 20 of 4 1.03None
Larval Salivary gland3 ± 10 of 4 1.88None
Larval midgut2 ± 00 of 4 1.07None
Larval tubule1 ± 00 of 4 0.90None
Larval hindgut1 ± 00 of 4 0.53None
Larval fat body3 ± 10 of 4 1.90None
Larval trachea0 ± 00 of 4 0.48None
Larval carcass1 ± 00 of 4 0.67None
S2 cells (growing)1 ± 00 of 4 0.88None
Whole fly1 ± 10 of 4

Looking for FBgn0034458. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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