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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034461 through 18771 annotations produced 1 hits


(CG15124):

Annotation Number : CG15124
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034461
Gbrowse : chr2R:15530542-15531118 (+) // 100.0 //
Probeset : 1625853_at
Accessions : protein= NP_611435;, nucleotide= NM_137591;
FlyMine data for FBgn0034461.
BioGrid reports that CG15124 interacts with CG15845 CG31136 CG6233 CG8203 CG9754 CG15152 CG2241 Dmel CG2987 CG32369 CG8725 CG9900 CG9986 Dmel CG33715 CG30422 .
VDRC has 2 RNAi stocks for FBgn0034461 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 02 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion6 ± 01 of 4 0.00Down
Salivary gland12 ± 31 of 4 0.09Down
Crop7 ± 20 of 4 0.10Down
Midgut4 ± 10 of 4 0.00Down
Tubule4 ± 10 of 4 0.00Down
Hindgut4 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.02Down
Fat body8 ± 13 of 4 0.06Down
Ovary3 ± 10 of 4 0.00Down
Testis1185 ± 104 of 4 8.70Up
Male accessory glands8 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.03Down
Mated spermatheca4 ± 11 of 4 0.03Down
Adult carcass13 ± 21 of 4 0.10Down
Larval CNS4 ± 01 of 4 0.03Down
Larval Salivary gland4 ± 00 of 4 0.04Down
Larval midgut5 ± 00 of 4 0.04Down
Larval tubule6 ± 00 of 4 0.00Down
Larval hindgut7 ± 13 of 4 0.05Down
Larval fat body187 ± 934 of 4 1.40None
Larval trachea9 ± 141 of 4 0.07Down
Larval carcass4 ± 00 of 4 0.03Down
S2 cells (growing)3 ± 11 of 4 0.03Down
Whole fly136 ± 104 of 4

Looking for FBgn0034461. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime