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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034468 through 18771 annotations produced 1 hits



Odorant-binding protein 56a (Obp56a):

Annotation Number : CG11797
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034468
Gbrowse : chr2R:15585227-15586016 (+) // 100.0 //
Probeset : 1624074_at
Accessions : protein= NP_611442;, nucleotide= NM_137598;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005549 // odorant binding // not recorded /// 0005
FlyMine data for FBgn0034468.
BDGP gene expression has embryonic in situ data for Obp56a: 46 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0034468 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head395 874 of 4 0.90None
Eye16 53 of 4 0.04Down
Thoracicoabdominal ganglion10 61 of 4 0.00Down
Salivary gland10 40 of 4 0.03Down
Crop2 10 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut50 44 of 4 0.10Down
Heart2 00 of 4 0.00Down
Fat body4 30 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis21 04 of 4 0.10Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca3 00 of 4 0.01Down
Mated spermatheca2 00 of 4 0.01Down
Adult carcass1481 884 of 4 3.50Up
Larval CNS2 21 of 4 0.01Down
Larval Salivary gland4 20 of 4 0.01Down
Larval midgut3 00 of 4 0.01Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut180 354 of 4 0.42Down
Larval fat body3 10 of 4 0.00Down
Larval trachea2234 4634 of 4 5.26Up
Larval carcass428 494 of 4 1.01None
S2 cells (growing)1 00 of 4 0.00Down
Whole fly424 744 of 4

Looking for FBgn0034468. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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