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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034470 through 18771 annotations produced 1 hits



Odorant-binding protein 56d (Obp56d):

Annotation Number : CG11218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034470
Gbrowse : chr2R:15590643-15591300 (-) // 98.49 //
Probeset : 1623659_at
Accessions : protein= NP_611444;, nucleotide= NM_137600;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005549 // odorant binding // not recorded /// 0005
FlyMine data for FBgn0034470.
BioGrid reports that CG11218 interacts with CG32688 CG13928 CG3923 .
VDRC has 1 RNAi stocks for FBgn0034470 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 84 of 4 0.00Down
Head4046 1204 of 4 2.80Up
Eye2102 5204 of 4 1.43None
Thoracicoabdominal ganglion61 84 of 4 0.00Down
Salivary gland18 80 of 4 0.01Down
Crop596 314 of 4 0.40Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut5663 2114 of 4 3.90Up
Heart9 33 of 4 0.01Down
Fat body19 143 of 4 0.01Down
Ovary1 00 of 4 0.00Down
Testis106 94 of 4 0.10Down
Male accessory glands5 20 of 4 0.00Down
Virgin spermatheca21 24 of 4 0.01Down
Mated spermatheca40 74 of 4 0.03Down
Adult carcass2116 454 of 4 1.40None
Larval CNS6 51 of 4 0.00Down
Larval Salivary gland10 31 of 4 0.01Down
Larval midgut7 20 of 4 0.01Down
Larval tubule464 664 of 4 0.30Down
Larval hindgut202 294 of 4 0.14Down
Larval fat body213 2032 of 4 0.10Down
Larval trachea4757 3764 of 4 3.24Up
Larval carcass1831 3124 of 4 1.25None
S2 cells (growing)0 00 of 4 0.00Down
Whole fly1467 2634 of 4

Looking for FBgn0034470. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime