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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034472 through 18771 annotations produced 1 hits



thioredoxin (CG8517):

Annotation Number : CG8517
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034472
Gbrowse : chr2R:15601580-15602373 (+) // 99.32 //
Probeset : 1628760_at
Accessions : protein= NP_611446;, nucleotide= NM_137602;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0015036 // disulfide oxidoreductase activity // inferred from sequence or structural similarity
FlyMine data for FBgn0034472.
BDGP gene expression has embryonic in situ data for CG8517: 2 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034472 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye1 00 of 4 0.00Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland18 30 of 4 0.05Down
Crop8 11 of 4 0.00Down
Midgut10 10 of 4 0.00Down
Tubule4 00 of 4 0.00Down
Hindgut5 10 of 4 0.00Down
Heart3 10 of 4 0.01Down
Fat body4 30 of 4 0.01Down
Ovary1 00 of 4 0.00Down
Testis2605 544 of 4 6.80Up
Male accessory glands65 14 of 4 0.20Down
Virgin spermatheca2 10 of 4 0.01Down
Mated spermatheca5 10 of 4 0.01Down
Adult carcass18 20 of 4 0.00Down
Larval CNS3 30 of 4 0.01Down
Larval Salivary gland7 20 of 4 0.02Down
Larval midgut10 30 of 4 0.03Down
Larval tubule3 00 of 4 0.00Down
Larval hindgut5 00 of 4 0.01Down
Larval fat body321 1564 of 4 0.80None
Larval trachea21 303 of 4 0.06Down
Larval carcass3 10 of 4 0.01Down
S2 cells (growing)3 10 of 4 0.01Down
Whole fly382 224 of 4

Looking for FBgn0034472. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime