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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034473 through 18771 annotations produced 1 hits



Odorant receptor 56a (Or56a):

Annotation Number : CG12501
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034473
Gbrowse : chr2R:15656965-15658738 (-) // 100.0 //
Probeset : 1631260_at
Accessions : protein= NP_523796;, nucleotide= NM_079072;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0034473.
BioGrid reports that CG12501 interacts with CG7347 .
VDRC has 3 RNAi stocks for FBgn0034473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head6 ± 20 of 4 2.30None
Eye0 ± 00 of 4 0.35None
Thoracicoabdominal ganglion1 ± 00 of 4 0.70None
Salivary gland9 ± 30 of 4 3.61None
Crop1 ± 00 of 4 0.70None
Midgut1 ± 00 of 4 0.50None
Tubule2 ± 00 of 4 0.80Down
Hindgut1 ± 00 of 4 0.50None
Heart3 ± 10 of 4 1.19None
Fat body2 ± 20 of 4 0.86None
Ovary1 ± 00 of 4 0.40None
Testis7 ± 01 of 4 2.70Up
Male accessory glands19 ± 23 of 4 7.20Up
Virgin spermatheca2 ± 00 of 4 0.82None
Mated spermatheca2 ± 00 of 4 0.86None
Adult carcass2 ± 00 of 4 0.70None
Larval CNS0 ± 00 of 4 0.23None
Larval Salivary gland4 ± 10 of 4 1.56None
Larval midgut0 ± 00 of 4 0.26None
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut0 ± 00 of 4 0.29None
Larval fat body3 ± 10 of 4 1.30None
Larval trachea1 ± 00 of 4 0.38None
Larval carcass1 ± 00 of 4 0.42None
S2 cells (growing)1 ± 00 of 4 0.62None
Whole fly2 ± 10 of 4

Looking for FBgn0034473. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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