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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034476 through 18771 annotations produced 1 hits



Toll-like (Toll-7):

Annotation Number : CG8595
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034476
Gbrowse : chr2R:15714409-15718750 (+) // 100.0 //
Probeset : 1639160_at
Accessions : protein= NP_523797;, nucleotide= NM_079073;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotat
Interpro : 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor
FlyMine data for FBgn0034476.
BDGP gene expression has embryonic in situ data for Toll-7: 18 pix of staining in 13 body parts.
Homophila reports that CG8595 is a close match (6e-11) to human gene ARMD10;TLR4 (NP_612564), a gene associated with Endotoxin hyporesponsiveness (3);{Colorectal cancer, susceptibility to}, 114500 (3);{Longevity, susceptibility to}, 152430 (3);{Macular degeneration, age-related, 10}, 611488 (3).
TRiP has 1 RNAi stocks for FBgn0034476 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034476 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 22 of 4 5.50Up
Head7 ± 20 of 4 2.20None
Eye3 ± 10 of 4 1.04None
Thoracicoabdominal ganglion15 ± 20 of 4 4.90Up
Salivary gland7 ± 30 of 4 2.49None
Crop5 ± 10 of 4 1.60None
Midgut8 ± 10 of 4 2.70None
Tubule1 ± 00 of 4 0.30Down
Hindgut5 ± 20 of 4 1.70None
Heart0 ± 00 of 4 0.18None
Fat body1 ± 00 of 4 0.37None
Ovary0 ± 00 of 4 0.20None
Testis29 ± 34 of 4 9.50Up
Male accessory glands5 ± 10 of 4 1.70None
Virgin spermatheca1 ± 00 of 4 0.32None
Mated spermatheca1 ± 00 of 4 0.44None
Adult carcass5 ± 30 of 4 1.70None
Larval CNS23 ± 60 of 4 7.42Up
Larval Salivary gland2 ± 00 of 4 0.85None
Larval midgut4 ± 20 of 4 1.52None
Larval tubule2 ± 10 of 4 0.80None
Larval hindgut1 ± 00 of 4 0.53None
Larval fat body6 ± 30 of 4 2.20None
Larval trachea4 ± 10 of 4 1.36None
Larval carcass1 ± 00 of 4 0.39None
S2 cells (growing)1 ± 00 of 4 0.47None
Whole fly3 ± 10 of 4

Looking for FBgn0034476. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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