Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034478 through 18771 annotations produced 1 hits



(CG10822):

Annotation Number : CG10822
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034478
Gbrowse : chr2R:15838959-15839356 (+) // 100.0 //
Probeset : 1626572_at
Accessions : protein= NP_611450;, nucleotide= NM_137606;
Pathway : 0030286 // dynein complex // inferred from sequence or structural similarity
Interpro : "0016787 // hydrolase activity // inferred from electronic annotation /// 0042623 // ATPase activity
FlyMine data for FBgn0034478.
BioGrid reports that CG10822 interacts with CG8357 CG12470 CG3085 CG6576 CG7231 .
VDRC has 3 RNAi stocks for FBgn0034478 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head3 ± 00 of 4 0.00Down
Eye3 ± 11 of 4 0.05Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland6 ± 20 of 4 0.10Down
Crop1 ± 00 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule4 ± 10 of 4 0.10Down
Hindgut3 ± 20 of 4 0.10Down
Heart3 ± 10 of 4 0.06Down
Fat body2 ± 30 of 4 0.04Down
Ovary2 ± 10 of 4 0.00Down
Testis839 ± 134 of 412.30Up
Male accessory glands4 ± 21 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.04Down
Mated spermatheca2 ± 10 of 4 0.04Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.05Down
Larval Salivary gland7 ± 10 of 4 0.11Down
Larval midgut4 ± 11 of 4 0.07Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body97 ± 454 of 4 1.40None
Larval trachea7 ± 61 of 4 0.11Down
Larval carcass4 ± 10 of 4 0.07Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly68 ± 34 of 4

Looking for FBgn0034478. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime