FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034479 through 18771 annotations produced 1 hits

(CG8654):

Annotation Number : CG8654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034479
Gbrowse : chr2R:15868573-15872262 (+) // 100.0 //
Probeset : 1625584_at
Accessions : protein= NP_611451;, nucleotide= NM_137607;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0034479.
BDGP gene expression has embryonic in situ data for CG8654: 51 pix of staining in 23 body parts.
Homophila reports that CG8654 is a close match (6e-36) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 3 RNAi stocks for FBgn0034479 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	19 ± 1	4 of 4	0.00	Down
Head	710 ± 32	4 of 4	1.70	Up
Eye	509 ± 98	4 of 4	1.19	None
Thoracicoabdominal ganglion	26 ± 3	4 of 4	0.10	Down
Salivary gland	1375 ± 52	4 of 4	3.22	Up
Crop	123 ± 4	4 of 4	0.30	Down
Midgut	5 ± 1	0 of 4	0.00	Down
Tubule	670 ± 26	4 of 4	1.60	Up
Hindgut	336 ± 8	4 of 4	0.80	None
Heart	1341 ± 55	4 of 4	3.14	Up
Fat body	2933 ± 217	4 of 4	6.87	Up
Ovary	3 ± 1	1 of 4	0.00	Down
Testis	605 ± 18	4 of 4	1.40	None
Male accessory glands	17 ± 2	3 of 4	0.00	Down
Virgin spermatheca	2740 ± 240	4 of 4	6.42	Up
Mated spermatheca	3548 ± 153	4 of 4	8.32	Up
Adult carcass	1185 ± 86	4 of 4	2.80	Up
Larval CNS	12 ± 0	4 of 4	0.03	Down
Larval Salivary gland	39 ± 5	4 of 4	0.09	Down
Larval midgut	5 ± 2	0 of 4	0.01	Down
Larval tubule	437 ± 12	4 of 4	1.00	None
Larval hindgut	150 ± 28	4 of 4	0.35	Down
Larval fat body	361 ± 45	4 of 4	0.80	None
Larval trachea	308 ± 30	4 of 4	0.72	None
Larval carcass	53 ± 14	4 of 4	0.13	Down
S2 cells (growing)	1 ± 0	0 of 4	0.00	Down
Whole fly	426 ± 75	4 of 4

Looking for FBgn0034479. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720