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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034479 through 18771 annotations produced 1 hits



(CG8654):

Annotation Number : CG8654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034479
Gbrowse : chr2R:15868573-15872262 (+) // 100.0 //
Probeset : 1625584_at
Accessions : protein= NP_611451;, nucleotide= NM_137607;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0034479.
BDGP gene expression has embryonic in situ data for CG8654: 51 pix of staining in 23 body parts.
Homophila reports that CG8654 is a close match (6e-36) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 3 RNAi stocks for FBgn0034479 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 14 of 4 0.00Down
Head710 324 of 4 1.70Up
Eye509 984 of 4 1.19None
Thoracicoabdominal ganglion26 34 of 4 0.10Down
Salivary gland1375 524 of 4 3.22Up
Crop123 44 of 4 0.30Down
Midgut5 10 of 4 0.00Down
Tubule670 264 of 4 1.60Up
Hindgut336 84 of 4 0.80None
Heart1341 554 of 4 3.14Up
Fat body2933 2174 of 4 6.87Up
Ovary3 11 of 4 0.00Down
Testis605 184 of 4 1.40None
Male accessory glands17 23 of 4 0.00Down
Virgin spermatheca2740 2404 of 4 6.42Up
Mated spermatheca3548 1534 of 4 8.32Up
Adult carcass1185 864 of 4 2.80Up
Larval CNS12 04 of 4 0.03Down
Larval Salivary gland39 54 of 4 0.09Down
Larval midgut5 20 of 4 0.01Down
Larval tubule437 124 of 4 1.00None
Larval hindgut150 284 of 4 0.35Down
Larval fat body361 454 of 4 0.80None
Larval trachea308 304 of 4 0.72None
Larval carcass53 144 of 4 0.13Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly426 754 of 4

Looking for FBgn0034479. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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