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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034480 through 18771 annotations produced 1 hits



(CG16898):

Annotation Number : CG16898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034480
Gbrowse : chr2R:15891123-15892492 (-) // 100.0 //
Probeset : 1625053_at
Accessions : protein= NP_611452;, nucleotide= NM_137608;
FlyMine data for FBgn0034480.
VDRC has 2 RNAi stocks for FBgn0034480 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 12 of 4 0.10Down
Head87 ± 274 of 4 1.00None
Eye19 ± 24 of 4 0.22Down
Thoracicoabdominal ganglion7 ± 12 of 4 0.10Down
Salivary gland11 ± 11 of 4 0.13Down
Crop4 ± 12 of 4 0.10Down
Midgut721 ± 514 of 4 8.40Up
Tubule1418 ± 1304 of 416.50Up
Hindgut184 ± 54 of 4 2.10Up
Heart157 ± 174 of 4 1.84Up
Fat body242 ± 414 of 4 2.82Up
Ovary0 ± 00 of 4 0.00Down
Testis138 ± 174 of 4 1.60None
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca714 ± 1044 of 4 8.31Up
Mated spermatheca255 ± 474 of 4 2.97Up
Adult carcass73 ± 34 of 4 0.90None
Larval CNS12 ± 73 of 4 0.15Down
Larval Salivary gland3 ± 11 of 4 0.04Down
Larval midgut211 ± 264 of 4 2.46Up
Larval tubule101 ± 134 of 4 1.20None
Larval hindgut212 ± 134 of 4 2.47Up
Larval fat body7 ± 21 of 4 0.10Down
Larval trachea2 ± 41 of 4 0.03Down
Larval carcass3 ± 11 of 4 0.04Down
S2 cells (growing)1 ± 01 of 4 0.02Down
Whole fly86 ± 184 of 4

Looking for FBgn0034480. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime