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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034483 through 18771 annotations produced 1 hits



(CG16894):

Annotation Number : CG16894
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034483
Gbrowse : chr2R:16099108-16100124 (-) // 100.0 //
Probeset : 1640927_at
Accessions : protein= NP_611455;, nucleotide= NM_137611;
Interpro : 0019787 // small conjugating protein ligase activity // inferred from electronic annotation
FlyMine data for FBgn0034483.
BioGrid reports that CG16894 interacts with CG1715 CG4042 CG6838 CG4484 CG4835 CG5670 CG6946 .
VDRC has 2 RNAi stocks for FBgn0034483 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.10Down
Head3 ± 10 of 4 0.00Down
Eye4 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland9 ± 10 of 4 0.11Down
Crop5 ± 10 of 4 0.10Down
Midgut6 ± 10 of 4 0.10Down
Tubule5 ± 10 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.03Down
Fat body4 ± 40 of 4 0.06Down
Ovary2 ± 10 of 4 0.00Down
Testis815 ± 284 of 4 9.90Up
Male accessory glands7 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.03Down
Mated spermatheca4 ± 11 of 4 0.06Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS5 ± 13 of 4 0.06Down
Larval Salivary gland2 ± 10 of 4 0.02Down
Larval midgut5 ± 10 of 4 0.06Down
Larval tubule7 ± 01 of 4 0.10Down
Larval hindgut4 ± 11 of 4 0.06Down
Larval fat body69 ± 334 of 4 0.80None
Larval trachea6 ± 51 of 4 0.08Down
Larval carcass6 ± 00 of 4 0.07Down
S2 cells (growing)3 ± 00 of 4 0.04Down
Whole fly82 ± 44 of 4

Looking for FBgn0034483. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime