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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034484 through 18771 annotations produced 1 hits


Annotation Number : CG11044
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034484
Gbrowse : chr2R:16119335-16122438 (+) // 100.0 //
Probeset : 1623662_at
Accessions : protein= NP_611456;, nucleotide= NM_137612;
FlyMine data for FBgn0034484.
TRiP has 1 RNAi stocks for FBgn0034484 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034484 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 01 of 4 0.00Down
Head70 54 of 4 1.50Up
Eye9 04 of 4 0.20Down
Thoracicoabdominal ganglion9 04 of 4 0.20Down
Salivary gland11 22 of 4 0.25Down
Crop153 44 of 4 3.20Up
Midgut7 01 of 4 0.20Down
Tubule5 01 of 4 0.10Down
Hindgut75 24 of 4 1.60Up
Heart64 34 of 4 1.36Up
Fat body9 34 of 4 0.21Down
Ovary2 00 of 4 0.10Down
Testis33 34 of 4 0.70None
Male accessory glands9 20 of 4 0.20Down
Virgin spermatheca7 13 of 4 0.17Down
Mated spermatheca10 14 of 4 0.23Down
Adult carcass187 144 of 4 4.00Up
Larval CNS3 10 of 4 0.07Down
Larval Salivary gland9 10 of 4 0.20Down
Larval midgut6 13 of 4 0.15Down
Larval tubule5 00 of 4 0.10Down
Larval hindgut19 24 of 4 0.40Down
Larval fat body10 31 of 4 0.20Down
Larval trachea5 21 of 4 0.12Down
Larval carcass73 154 of 4 1.56None
S2 cells (growing)4 01 of 4 0.10Down
Whole fly47 44 of 4

Looking for FBgn0034484. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime