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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034485 through 18771 annotations produced 1 hits



(CG11099):

Annotation Number : CG11099
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034485
Gbrowse : chr2R:16123739-16126706 (+) // 100.0 //
Probeset : 1634667_at
Accessions : protein= NP_611457;, nucleotide= NM_137613;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0034485.
BDGP gene expression has embryonic in situ data for CG11099: 6 pix of staining in 1 body parts.
Homophila reports that CG11099 is a close match (1e-13) to human gene LRRC8;KIAA1437 (NP_062540), a gene associated with Agammaglobulinemia, non-Bruton type, 601495 (3).
VDRC has 2 RNAi stocks for FBgn0034485 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain863 394 of 427.50Up
Head246 134 of 4 7.90Up
Eye257 204 of 4 8.21Up
Thoracicoabdominal ganglion742 324 of 423.70Up
Salivary gland7 10 of 4 0.23Down
Crop77 44 of 4 2.50Up
Midgut6 10 of 4 0.20Down
Tubule3 00 of 4 0.10Down
Hindgut43 24 of 4 1.40Up
Heart48 24 of 4 1.54Up
Fat body6 30 of 4 0.22Down
Ovary1 00 of 4 0.10Down
Testis2 00 of 4 0.10Down
Male accessory glands9 30 of 4 0.30Down
Virgin spermatheca4 10 of 4 0.16Down
Mated spermatheca4 10 of 4 0.14Down
Adult carcass62 34 of 4 2.00Up
Larval CNS2 00 of 4 0.09Down
Larval Salivary gland4 20 of 4 0.13Down
Larval midgut3 10 of 4 0.11Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut9 23 of 4 0.29Down
Larval fat body3 10 of 4 0.10Down
Larval trachea5 51 of 4 0.19Down
Larval carcass9 02 of 4 0.32Down
S2 cells (growing)2 00 of 4 0.08Down
Whole fly31 14 of 4

Looking for FBgn0034485. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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