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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034488 through 18771 annotations produced 1 hits



(CG11208):

Annotation Number : CG11208
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034488
Gbrowse : chr2R:16130255-16132904 (-) // 100.0 //
Probeset : 1630892_at
Accessions : protein= NP_611460;, nucleotide= NM_137616;
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred fr
FlyMine data for FBgn0034488.
BDGP gene expression has embryonic in situ data for CG11208: 38 pix of staining in 16 body parts.
BioGrid reports that CG11208 interacts with CG7662 CG8368 .
VDRC has 2 RNAi stocks for FBgn0034488 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 44 of 4 0.40Down
Head118 154 of 4 0.40Down
Eye116 74 of 4 0.40Down
Thoracicoabdominal ganglion125 34 of 4 0.40Down
Salivary gland191 114 of 4 0.66Down
Crop219 94 of 4 0.70Down
Midgut935 384 of 4 3.20Up
Tubule756 234 of 4 2.60Up
Hindgut138 34 of 4 0.50Down
Heart171 84 of 4 0.59Down
Fat body206 334 of 4 0.71Down
Ovary441 84 of 4 1.50Up
Testis47 34 of 4 0.20Down
Male accessory glands230 104 of 4 0.80None
Virgin spermatheca191 94 of 4 0.66Down
Mated spermatheca195 104 of 4 0.67Down
Adult carcass147 74 of 4 0.50Down
Larval CNS239 194 of 4 0.82None
Larval Salivary gland336 194 of 4 1.15None
Larval midgut923 684 of 4 3.16Up
Larval tubule1621 224 of 4 5.50Up
Larval hindgut192 204 of 4 0.66Down
Larval fat body752 694 of 4 2.60Up
Larval trachea318 374 of 4 1.09None
Larval carcass136 64 of 4 0.47Down
S2 cells (growing)347 104 of 4 1.19None
Whole fly292 224 of 4

Looking for FBgn0034488. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime