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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034490 through 18771 annotations produced 1 hits



(CG9864):

Annotation Number : CG9864
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034490
Gbrowse : chr2R:16135634-16137731 (-) // 100.0 //
Probeset : 1628721_at
Accessions : protein= NP_611462;, nucleotide= NM_137618;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0034490.
Homophila reports that CG9864 is a close match (1e-68) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
VDRC has 3 RNAi stocks for FBgn0034490 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head49 24 of 4 0.20Down
Eye5 00 of 4 0.02Down
Thoracicoabdominal ganglion9 22 of 4 0.00Down
Salivary gland1564 1304 of 4 6.63Up
Crop29 44 of 4 0.10Down
Midgut880 324 of 4 3.70Up
Tubule3696 1984 of 415.70Up
Hindgut1430 194 of 4 6.10Up
Heart6 22 of 4 0.03Down
Fat body6 30 of 4 0.03Down
Ovary150 94 of 4 0.60Down
Testis21 14 of 4 0.10Down
Male accessory glands523 234 of 4 2.20Up
Virgin spermatheca168 84 of 4 0.71Down
Mated spermatheca209 304 of 4 0.89None
Adult carcass26 34 of 4 0.10Down
Larval CNS3 41 of 4 0.01Down
Larval Salivary gland562 2054 of 4 2.39None
Larval midgut67 313 of 4 0.29Down
Larval tubule96 224 of 4 0.40Down
Larval hindgut547 1664 of 4 2.32None
Larval fat body8 20 of 4 0.00Down
Larval trachea40 144 of 4 0.17Down
Larval carcass191 334 of 4 0.81None
S2 cells (growing)7 01 of 4 0.03Down
Whole fly236 94 of 4

Looking for FBgn0034490. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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