FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034490 through 18771 annotations produced 1 hits

(CG9864):

Annotation Number : CG9864
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034490
Gbrowse : chr2R:16135634-16137731 (-) // 100.0 //
Probeset : 1628721_at
Accessions : protein= NP_611462;, nucleotide= NM_137618;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0034490.
Homophila reports that CG9864 is a close match (1e-68) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
VDRC has 3 RNAi stocks for FBgn0034490 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	0.00	Down
Head	49 ± 2	4 of 4	0.20	Down
Eye	5 ± 0	0 of 4	0.02	Down
Thoracicoabdominal ganglion	9 ± 2	2 of 4	0.00	Down
Salivary gland	1564 ± 130	4 of 4	6.63	Up
Crop	29 ± 4	4 of 4	0.10	Down
Midgut	880 ± 32	4 of 4	3.70	Up
Tubule	3696 ± 198	4 of 4	15.70	Up
Hindgut	1430 ± 19	4 of 4	6.10	Up
Heart	6 ± 2	2 of 4	0.03	Down
Fat body	6 ± 3	0 of 4	0.03	Down
Ovary	150 ± 9	4 of 4	0.60	Down
Testis	21 ± 1	4 of 4	0.10	Down
Male accessory glands	523 ± 23	4 of 4	2.20	Up
Virgin spermatheca	168 ± 8	4 of 4	0.71	Down
Mated spermatheca	209 ± 30	4 of 4	0.89	None
Adult carcass	26 ± 3	4 of 4	0.10	Down
Larval CNS	3 ± 4	1 of 4	0.01	Down
Larval Salivary gland	562 ± 205	4 of 4	2.39	None
Larval midgut	67 ± 31	3 of 4	0.29	Down
Larval tubule	96 ± 22	4 of 4	0.40	Down
Larval hindgut	547 ± 166	4 of 4	2.32	None
Larval fat body	8 ± 2	0 of 4	0.00	Down
Larval trachea	40 ± 14	4 of 4	0.17	Down
Larval carcass	191 ± 33	4 of 4	0.81	None
S2 cells (growing)	7 ± 0	1 of 4	0.03	Down
Whole fly	236 ± 9	4 of 4

Looking for FBgn0034490. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720