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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034491 through 18771 annotations produced 1 hits



transcription unit A (CG11055):

Annotation Number : CG11055
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034491
Gbrowse : chr2R:16145156-16149241 (+) // 100.0 //
Probeset : 1639384_s_at
Accessions : protein= NP_611463; /// NP_725941; /// NP_725942;, nucleotide= NM_137619; /// NM_166381; /// NM_166382;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0034491.
BioGrid reports that CG11055 interacts with CG11941 CG6766 CG7724 CG1132 CG13512 CG17018 CG32647 CG7570 CG7995 .
VDRC has 2 RNAi stocks for FBgn0034491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain151 94 of 4 1.10None
Head166 64 of 4 1.20None
Eye85 24 of 4 0.61Down
Thoracicoabdominal ganglion168 74 of 4 1.20None
Salivary gland287 44 of 4 2.06Up
Crop949 314 of 4 6.80Up
Midgut146 44 of 4 1.00None
Tubule107 44 of 4 0.80Down
Hindgut492 294 of 4 3.50Up
Heart88 44 of 4 0.63Down
Fat body99 94 of 4 0.71Down
Ovary289 104 of 4 2.10Up
Testis33 14 of 4 0.20Down
Male accessory glands99 64 of 4 0.70Down
Virgin spermatheca145 74 of 4 1.04None
Mated spermatheca140 124 of 4 1.00None
Adult carcass144 94 of 4 1.00None
Larval CNS157 144 of 4 1.13None
Larval Salivary gland109 124 of 4 0.78None
Larval midgut69 64 of 4 0.50Down
Larval tubule63 84 of 4 0.50Down
Larval hindgut173 154 of 4 1.24None
Larval fat body45 74 of 4 0.30Down
Larval trachea130 234 of 4 0.93None
Larval carcass165 64 of 4 1.18None
S2 cells (growing)337 34 of 4 2.41Up
Whole fly140 104 of 4

Looking for FBgn0034491. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime