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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034495 through 18771 annotations produced 1 hits



(CG11788):

Annotation Number : CG11788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034495
Gbrowse : chr2R:16162195-16163436 (+) // 100.0 //
Probeset : 1626286_at
Accessions : protein= NP_611466;, nucleotide= NM_137622;
FlyMine data for FBgn0034495.
VDRC has 2 RNAi stocks for FBgn0034495 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 04 of 4 1.10None
Head10 ± 10 of 4 0.40Down
Eye16 ± 01 of 4 0.61None
Thoracicoabdominal ganglion33 ± 14 of 4 1.20None
Salivary gland3 ± 00 of 4 0.14Down
Crop11 ± 30 of 4 0.40Down
Midgut15 ± 30 of 4 0.60None
Tubule3 ± 00 of 4 0.10Down
Hindgut10 ± 10 of 4 0.40Down
Heart4 ± 10 of 4 0.15Down
Fat body3 ± 10 of 4 0.11Down
Ovary61 ± 44 of 4 2.30Up
Testis6 ± 10 of 4 0.20Down
Male accessory glands8 ± 30 of 4 0.30Down
Virgin spermatheca3 ± 10 of 4 0.12Down
Mated spermatheca4 ± 20 of 4 0.17Down
Adult carcass7 ± 30 of 4 0.30Down
Larval CNS50 ± 44 of 4 1.87Up
Larval Salivary gland27 ± 24 of 4 1.02None
Larval midgut11 ± 00 of 4 0.41Down
Larval tubule13 ± 10 of 4 0.50None
Larval hindgut18 ± 00 of 4 0.69None
Larval fat body19 ± 10 of 4 0.70None
Larval trachea20 ± 34 of 4 0.74None
Larval carcass20 ± 10 of 4 0.74None
S2 cells (growing)49 ± 44 of 4 1.84Up
Whole fly27 ± 43 of 4

Looking for FBgn0034495. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime