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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034496 through 18771 annotations produced 1 hits



(CG9143):

Annotation Number : CG9143
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034496
Gbrowse : chr2R:16163474-16166501 (-) // 100.0 //
Probeset : 1631519_at
Accessions : protein= NP_611467;, nucleotide= NM_137623;
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from seq
FlyMine data for FBgn0034496.
VDRC has 2 RNAi stocks for FBgn0034496 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 14 of 4 0.70Down
Head24 ± 14 of 4 0.40Down
Eye25 ± 14 of 4 0.42Down
Thoracicoabdominal ganglion49 ± 24 of 4 0.80Down
Salivary gland70 ± 54 of 4 1.15None
Crop41 ± 34 of 4 0.70Down
Midgut33 ± 14 of 4 0.50Down
Tubule51 ± 84 of 4 0.90None
Hindgut31 ± 04 of 4 0.50Down
Heart32 ± 24 of 4 0.53Down
Fat body49 ± 44 of 4 0.81Down
Ovary143 ± 44 of 4 2.30Up
Testis7 ± 12 of 4 0.10Down
Male accessory glands88 ± 54 of 4 1.40Up
Virgin spermatheca54 ± 34 of 4 0.88None
Mated spermatheca83 ± 34 of 4 1.36Up
Adult carcass31 ± 34 of 4 0.50Down
Larval CNS92 ± 54 of 4 1.51Up
Larval Salivary gland96 ± 64 of 4 1.58Up
Larval midgut33 ± 24 of 4 0.55Down
Larval tubule15 ± 12 of 4 0.30Down
Larval hindgut47 ± 44 of 4 0.78Down
Larval fat body12 ± 12 of 4 0.20Down
Larval trachea64 ± 124 of 4 1.06None
Larval carcass55 ± 124 of 4 0.90None
S2 cells (growing)72 ± 34 of 4 1.18Up
Whole fly61 ± 14 of 4

Looking for FBgn0034496. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime