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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034499 through 18771 annotations produced 1 hits

CG9036 (Cpr56F):

Annotation Number : CG9036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034499
Gbrowse : chr2R:16175859-16179448 (-) // 100.0 //
Probeset : 1626291_at
Accessions : protein= NP_611470;, nucleotide= NM_137626;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0034499.
BDGP gene expression has embryonic in situ data for CG9036: 12 pix of staining in 6 body parts.
BioGrid reports that CG9036 interacts with CG9102 CG9573 .
VDRC has 3 RNAi stocks for FBgn0034499 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10None
Head2 00 of 4 0.30None
Eye4 21 of 4 0.47None
Thoracicoabdominal ganglion0 00 of 4 0.10Down
Salivary gland11 30 of 4 1.27None
Crop3 20 of 4 0.40None
Midgut2 00 of 4 0.20None
Tubule2 00 of 4 0.20Down
Hindgut23 24 of 4 2.50Up
Heart1 00 of 4 0.17None
Fat body2 10 of 4 0.27None
Ovary0 00 of 4 0.10Down
Testis77 34 of 4 8.40Up
Male accessory glands1 00 of 4 0.20None
Virgin spermatheca12 23 of 4 1.37None
Mated spermatheca9 22 of 4 0.98None
Adult carcass2 00 of 4 0.20None
Larval CNS3 10 of 4 0.33None
Larval Salivary gland2 10 of 4 0.22None
Larval midgut1 00 of 4 0.13None
Larval tubule2 10 of 4 0.30None
Larval hindgut1 00 of 4 0.18None
Larval fat body15 82 of 4 1.70None
Larval trachea15 112 of 4 1.63None
Larval carcass7 20 of 4 0.82None
S2 cells (growing)1 00 of 4 0.16None
Whole fly9 22 of 4

Looking for FBgn0034499. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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