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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034500 through 18771 annotations produced 1 hits



(CG11200):

Annotation Number : CG11200
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034500
Gbrowse : chr2R:16192019-16196170 (-) // 100.0 //
Probeset : 1637056_s_at
Accessions : protein= NP_611471; /// NP_725952;, nucleotide= NM_137627; /// NM_166388;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004090 // carbonyl reductase (NADPH) activity
FlyMine data for FBgn0034500.
BDGP gene expression has embryonic in situ data for CG11200: 27 pix of staining in 12 body parts.
Homophila reports that CG11200 is a close match (4e-24) to human gene FOR;WWOX (NP_057457), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).
BioGrid reports that CG11200 interacts with CG33144 CG8191 CG4824 CG7220 .
VDRC has 2 RNAi stocks for FBgn0034500 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 04 of 4 0.30Down
Head176 ± 44 of 4 1.90Up
Eye35 ± 64 of 4 0.39Down
Thoracicoabdominal ganglion19 ± 14 of 4 0.20Down
Salivary gland85 ± 14 of 4 0.93None
Crop1420 ± 294 of 415.60Up
Midgut231 ± 114 of 4 2.50Up
Tubule51 ± 94 of 4 0.60Down
Hindgut288 ± 154 of 4 3.20Up
Heart127 ± 104 of 4 1.40Up
Fat body344 ± 424 of 4 3.77Up
Ovary74 ± 54 of 4 0.80None
Testis9 ± 14 of 4 0.10Down
Male accessory glands16 ± 24 of 4 0.20Down
Virgin spermatheca70 ± 94 of 4 0.77None
Mated spermatheca207 ± 344 of 4 2.27Up
Adult carcass281 ± 134 of 4 3.10Up
Larval CNS21 ± 24 of 4 0.23Down
Larval Salivary gland23 ± 24 of 4 0.25Down
Larval midgut31 ± 24 of 4 0.35Down
Larval tubule15 ± 14 of 4 0.20Down
Larval hindgut27 ± 24 of 4 0.30Down
Larval fat body40 ± 34 of 4 0.40Down
Larval trachea100 ± 164 of 4 1.10None
Larval carcass15 ± 14 of 4 0.16Down
S2 cells (growing)70 ± 54 of 4 0.77Down
Whole fly91 ± 64 of 4

Looking for FBgn0034500. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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