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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034501 through 18771 annotations produced 1 hits



(CG13868):

Annotation Number : CG13868
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034501
Gbrowse : chr2R:16196216-16204415 (-) // 100.0 //
Probeset : 1638183_at
Accessions : protein= NP_001163215; /// NP_611472;, nucleotide= NM_001169744; /// NM_137628;
FlyMine data for FBgn0034501.
BDGP gene expression has embryonic in situ data for CG13868: 29 pix of staining in 10 body parts.
VDRC has 1 RNAi stocks for FBgn0034501 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 53 of 4 0.40Down
Head50 ± 44 of 4 1.20None
Eye23 ± 24 of 4 0.57Down
Thoracicoabdominal ganglion23 ± 33 of 4 0.60Down
Salivary gland21 ± 53 of 4 0.51Down
Crop20 ± 14 of 4 0.50Down
Midgut24 ± 14 of 4 0.60Down
Tubule267 ± 184 of 4 6.40Up
Hindgut43 ± 34 of 4 1.00None
Heart78 ± 44 of 4 1.89Up
Fat body276 ± 424 of 4 6.65Up
Ovary8 ± 03 of 4 0.20Down
Testis8 ± 02 of 4 0.20Down
Male accessory glands20 ± 54 of 4 0.50Down
Virgin spermatheca313 ± 184 of 4 7.54Up
Mated spermatheca366 ± 644 of 4 8.82Up
Adult carcass96 ± 24 of 4 2.30Up
Larval CNS14 ± 34 of 4 0.35Down
Larval Salivary gland8 ± 04 of 4 0.21Down
Larval midgut71 ± 34 of 4 1.72Up
Larval tubule202 ± 164 of 4 4.90Up
Larval hindgut90 ± 74 of 4 2.16Up
Larval fat body134 ± 174 of 4 3.20Up
Larval trachea7 ± 33 of 4 0.18Down
Larval carcass14 ± 14 of 4 0.34Down
S2 cells (growing)21 ± 34 of 4 0.52Down
Whole fly41 ± 54 of 4

Looking for FBgn0034501. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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