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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034502 through 18771 annotations produced 1 hits


Annotation Number : CG13871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034502
Gbrowse : chr2R:16204912-16206475 (+) // 100.0 //
Probeset : 1636444_at
Accessions : protein= NP_611473;, nucleotide= NM_137629;
FlyMine data for FBgn0034502.
BioGrid reports that CG13871 interacts with CG18766 CG15638 CG17075 CG1825 CG2009 Dmel CG2987 CG3048 CG3613 CG3995 CG4394 CG5792 CG7281 CG9300 CG31319 .
VDRC has 1 RNAi stocks for FBgn0034502 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 10 of 4 0.20Down
Head2 00 of 4 0.20Down
Eye1 00 of 4 0.18Down
Thoracicoabdominal ganglion6 00 of 4 0.70Down
Salivary gland9 30 of 4 1.05None
Crop2 00 of 4 0.20Down
Midgut4 10 of 4 0.50Down
Tubule4 00 of 4 0.50Down
Hindgut2 10 of 4 0.30Down
Heart0 00 of 4 0.06Down
Fat body8 22 of 4 0.96None
Ovary1 00 of 4 0.10Down
Testis181 124 of 420.00Up
Male accessory glands7 11 of 4 0.80None
Virgin spermatheca6 10 of 4 0.68None
Mated spermatheca9 01 of 4 1.03None
Adult carcass5 20 of 4 0.60None
Larval CNS2 10 of 4 0.32Down
Larval Salivary gland4 20 of 4 0.49None
Larval midgut5 10 of 4 0.60None
Larval tubule5 11 of 4 0.50Down
Larval hindgut2 00 of 4 0.26Down
Larval fat body41 253 of 4 4.50None
Larval trachea3 30 of 4 0.33Down
Larval carcass1 00 of 4 0.15Down
S2 cells (growing)2 00 of 4 0.24Down
Whole fly9 02 of 4

Looking for FBgn0034502. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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