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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034503 through 18771 annotations produced 1 hits



Mediator complex subunit 8 (MED8):

Annotation Number : CG13867
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034503
Gbrowse : chr2R:16213345-16214311 (-) // 100.0 //
Probeset : 1630559_at
Accessions : protein= NP_722456;, nucleotide= NM_153772;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred by curator /// 001
Interpro : 0016455 // RNA polymerase II transcription mediator activity // inferred from mutant phenotype /// 0016455 // RNA polyme
FlyMine data for FBgn0034503.
BDGP gene expression has embryonic in situ data for Arc32: 4 pix of staining in 1 body parts.
BioGrid reports that CG13867 interacts with CG15556 CG3529 CG18332 CG31175 CG6667 .
TRiP has 1 RNAi stocks for FBgn0034503 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034503 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain117 ± 34 of 4 1.10None
Head103 ± 64 of 4 0.90None
Eye130 ± 34 of 4 1.17Up
Thoracicoabdominal ganglion140 ± 84 of 4 1.30Up
Salivary gland127 ± 144 of 4 1.15None
Crop157 ± 64 of 4 1.40Up
Midgut110 ± 64 of 4 1.00None
Tubule53 ± 44 of 4 0.50Down
Hindgut122 ± 14 of 4 1.10None
Heart98 ± 44 of 4 0.89None
Fat body109 ± 134 of 4 0.98None
Ovary259 ± 44 of 4 2.30Up
Testis91 ± 54 of 4 0.80Down
Male accessory glands96 ± 94 of 4 0.90None
Virgin spermatheca133 ± 144 of 4 1.20None
Mated spermatheca130 ± 94 of 4 1.17None
Adult carcass134 ± 124 of 4 1.20None
Larval CNS212 ± 134 of 4 1.90Up
Larval Salivary gland116 ± 64 of 4 1.05None
Larval midgut81 ± 64 of 4 0.73Down
Larval tubule115 ± 54 of 4 1.00None
Larval hindgut142 ± 44 of 4 1.28Up
Larval fat body135 ± 124 of 4 1.20None
Larval trachea117 ± 134 of 4 1.05None
Larval carcass97 ± 54 of 4 0.88None
S2 cells (growing)135 ± 74 of 4 1.21Up
Whole fly111 ± 54 of 4

Looking for FBgn0034503. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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