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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034504 through 18771 annotations produced 1 hits



(CG8929):

Annotation Number : CG8929
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034504
Gbrowse : chr2R:16214771-16218229 (+) // 100.0 //
Probeset : 1637223_s_at
Accessions : protein= NP_611476; /// NP_725957; /// NP_725958;, nucleotide= NM_137632; /// NM_166389; /// NM_166390;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034504.
BDGP gene expression has embryonic in situ data for CG8929: 4 pix of staining in 1 body parts.
BioGrid reports that CG8929 interacts with CG9930 .
TRiP has 1 RNAi stocks for FBgn0034504 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034504 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain684 274 of 4 3.20Up
Head205 24 of 4 1.00None
Eye235 64 of 4 1.10None
Thoracicoabdominal ganglion599 274 of 4 2.80Up
Salivary gland439 54 of 4 2.05Up
Crop247 64 of 4 1.20None
Midgut193 84 of 4 0.90None
Tubule183 54 of 4 0.90Down
Hindgut213 74 of 4 1.00None
Heart172 54 of 4 0.81Down
Fat body189 154 of 4 0.89None
Ovary393 164 of 4 1.80Up
Testis95 44 of 4 0.40Down
Male accessory glands407 64 of 4 1.90Up
Virgin spermatheca226 54 of 4 1.06None
Mated spermatheca232 134 of 4 1.08None
Adult carcass201 154 of 4 0.90None
Larval CNS637 254 of 4 2.97Up
Larval Salivary gland419 24 of 4 1.96Up
Larval midgut115 74 of 4 0.54Down
Larval tubule301 24 of 4 1.40Up
Larval hindgut213 124 of 4 1.00None
Larval fat body358 144 of 4 1.70Up
Larval trachea311 194 of 4 1.45Up
Larval carcass259 184 of 4 1.21None
S2 cells (growing)362 14 of 4 1.69Up
Whole fly214 124 of 4

Looking for FBgn0034504. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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