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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034506 through 18771 annotations produced 1 hits


Annotation Number : CG13870
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034506
Gbrowse : chr2R:16231349-16233384 (+) // 100.0 //
Probeset : 1629749_a_at
Accessions : protein= NP_611478; /// NP_725961;, nucleotide= NM_137634; /// NM_166391;
FlyMine data for FBgn0034506.
BDGP gene expression has embryonic in situ data for CG13870: 4 pix of staining in 1 body parts.
BioGrid reports that CG13870 interacts with Dmel CG34168 .
VDRC has 3 RNAi stocks for FBgn0034506 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 12 of 4 0.30Down
Head6 10 of 4 0.30Down
Eye1 00 of 4 0.07Down
Thoracicoabdominal ganglion4 11 of 4 0.20Down
Salivary gland20 30 of 4 0.86None
Crop5 10 of 4 0.20Down
Midgut3 00 of 4 0.20Down
Tubule5 00 of 4 0.20Down
Hindgut4 10 of 4 0.20Down
Heart1 10 of 4 0.08Down
Fat body12 50 of 4 0.51Down
Ovary5 10 of 4 0.20Down
Testis322 164 of 413.70Up
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca5 10 of 4 0.21Down
Mated spermatheca10 30 of 4 0.43Down
Adult carcass14 10 of 4 0.60Down
Larval CNS5 22 of 4 0.23Down
Larval Salivary gland8 11 of 4 0.36Down
Larval midgut13 01 of 4 0.56Down
Larval tubule5 10 of 4 0.20Down
Larval hindgut6 11 of 4 0.26Down
Larval fat body49 233 of 4 2.10None
Larval trachea4 20 of 4 0.19Down
Larval carcass10 12 of 4 0.46Down
S2 cells (growing)5 10 of 4 0.24Down
Whole fly23 14 of 4

Looking for FBgn0034506. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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