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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034507 through 18771 annotations produced 1 hits



(CG11192):

Annotation Number : CG11192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034507
Gbrowse : chr2R:16241718-16242528 (-) // 100.0 //
Probeset : 1626013_at
Accessions : protein= NP_611479;, nucleotide= NM_137635;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0034507.
Homophila reports that CG11192 is a close match (2e-12) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
VDRC has 1 RNAi stocks for FBgn0034507 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.50Down
Head5 10 of 4 0.70None
Eye1 00 of 4 0.15Down
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland11 20 of 4 1.45None
Crop6 30 of 4 0.90None
Midgut38 31 of 4 4.80Up
Tubule13 20 of 4 1.70None
Hindgut140 74 of 417.70Up
Heart0 00 of 4 0.08Down
Fat body6 20 of 4 0.79None
Ovary3 10 of 4 0.50Down
Testis3 00 of 4 0.50Down
Male accessory glands10 10 of 4 1.30None
Virgin spermatheca6 10 of 4 0.88None
Mated spermatheca8 30 of 4 1.08None
Adult carcass4 10 of 4 0.60None
Larval CNS4 00 of 4 0.53Down
Larval Salivary gland2 10 of 4 0.37None
Larval midgut59 84 of 4 7.49Up
Larval tubule7 00 of 4 1.00None
Larval hindgut27 14 of 4 3.44Up
Larval fat body33 131 of 4 4.30None
Larval trachea2 00 of 4 0.30Down
Larval carcass6 10 of 4 0.80None
S2 cells (growing)6 00 of 4 0.78None
Whole fly7 00 of 4

Looking for FBgn0034507. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime