Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034513 through 18771 annotations produced 1 hits



(CG13423):

Annotation Number : CG13423
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034513
Gbrowse : chr2R:16424082-16425762 (+) // 99.69 //
Probeset : 1623431_at
Accessions : protein= NP_611485;, nucleotide= NM_137641;
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004197 // cystei
FlyMine data for FBgn0034513.
Homophila reports that CG13423 is a close match (2e-66) to human gene BLMH;BMH (NP_000377), a gene associated with {Alzheimer disease, susceptibility to}, 104300 (3).
BioGrid reports that CG13423 interacts with CG13906 CG14270 CG1440 CG14711 CG15634 CG18619 CG2102 CG2261 CG2807 CG31324 CG3136 CG3510 CG3792 CG4303 CG4533 CG4717 CG5708 CG5792 CG7371 CG9426 CG9765 .
VDRC has 4 RNAi stocks for FBgn0034513 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head4 ± 10 of 4 0.30Down
Eye3 ± 21 of 4 0.29Down
Thoracicoabdominal ganglion6 ± 00 of 4 0.50None
Salivary gland5 ± 10 of 4 0.50None
Crop7 ± 10 of 4 0.60None
Midgut1 ± 00 of 4 0.20Down
Tubule3 ± 00 of 4 0.30Down
Hindgut4 ± 10 of 4 0.40None
Heart5 ± 12 of 4 0.48None
Fat body7 ± 40 of 4 0.62None
Ovary0 ± 00 of 4 0.10Down
Testis144 ± 64 of 412.50Up
Male accessory glands7 ± 00 of 4 0.70None
Virgin spermatheca9 ± 10 of 4 0.81None
Mated spermatheca12 ± 10 of 4 1.11None
Adult carcass8 ± 20 of 4 0.80None
Larval CNS6 ± 22 of 4 0.54None
Larval Salivary gland5 ± 22 of 4 0.48None
Larval midgut2 ± 10 of 4 0.21Down
Larval tubule5 ± 00 of 4 0.50None
Larval hindgut4 ± 00 of 4 0.41None
Larval fat body31 ± 113 of 4 2.80None
Larval trachea3 ± 10 of 4 0.34Down
Larval carcass3 ± 10 of 4 0.34Down
S2 cells (growing)4 ± 00 of 4 0.35Down
Whole fly11 ± 22 of 4

Looking for FBgn0034513. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime