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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034514 through 18771 annotations produced 1 hits



(CG13427):

Annotation Number : CG13427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034514
Gbrowse : chr2R:16426452-16426770 (-) // 100.0 //
Probeset : 1627159_at
Accessions : protein= NP_611486;, nucleotide= NM_137642;
Pathway : 0031982 // vesicle // inferred from direct assay
FlyMine data for FBgn0034514.
VDRC has 1 RNAi stocks for FBgn0034514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10None
Head4 10 of 4 0.10None
Eye4 20 of 4 0.08None
Thoracicoabdominal ganglion3 10 of 4 0.10None
Salivary gland27 51 of 4 0.45None
Crop12 21 of 4 0.20None
Midgut8 20 of 4 0.10None
Tubule5 10 of 4 0.10Down
Hindgut4 10 of 4 0.10None
Heart3 30 of 4 0.06None
Fat body4 40 of 4 0.07None
Ovary2 00 of 4 0.00None
Testis4 00 of 4 0.10None
Male accessory glands2 10 of 4 0.00None
Virgin spermatheca6 21 of 4 0.11None
Mated spermatheca5 10 of 4 0.08None
Adult carcass25 41 of 4 0.40None
Larval CNS4 10 of 4 0.08None
Larval Salivary gland1 00 of 4 0.03None
Larval midgut8 20 of 4 0.14None
Larval tubule2 00 of 4 0.00None
Larval hindgut6 10 of 4 0.11None
Larval fat body7 10 of 4 0.10None
Larval trachea6 50 of 4 0.11None
Larval carcass4 00 of 4 0.07None
S2 cells (growing)5 10 of 4 0.10None
Whole fly61 373 of 4

Looking for FBgn0034514. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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