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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034517 through 18771 annotations produced 2 hits



CG18066 /// Odorant-binding protein 57d (Cpr57A /// Obp57d):

Annotation Number : CG18066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034517 /// FBgn0043536
Gbrowse : chr2R:16436757-16437590 (-) // 100.0 //
Probeset : 1626386_at
Accessions : protein= NP_001137721; /// NP_611489; /// NP_725973;, nucleotide= NM_001144249; /// NM_137645; /// NM_166397;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005549
FlyMine data for FBgn0034517 /// FBgn0043536.
BioGrid reports that CG18066 interacts with CG4107 CG40127 CG7015 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 ± 24 of 4 3.60Up
Head174 ± 134 of 4 5.20Up
Eye43 ± 44 of 4 1.29None
Thoracicoabdominal ganglion82 ± 44 of 4 2.40Up
Salivary gland135 ± 94 of 4 4.00Up
Crop456 ± 124 of 413.40Up
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut192 ± 74 of 4 5.70Up
Heart10 ± 23 of 4 0.31Down
Fat body6 ± 50 of 4 0.20Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.05Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass139 ± 84 of 4 4.10Up
Larval CNS13 ± 21 of 4 0.41Down
Larval Salivary gland2 ± 00 of 4 0.07Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut89 ± 54 of 4 2.63Up
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea970 ± 2004 of 428.62Up
Larval carcass1999 ± 614 of 458.93Up
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly33 ± 33 of 4



CG18066 /// Odorant-binding protein 57d (Cpr57A /// Obp57d):

Annotation Number : CG30150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034517 /// FBgn0043536
Gbrowse : chr2R:16436126-16436603 (-) // 100.0 //
Probeset : 1638679_at
Accessions : protein= NP_001137721; /// NP_611489; /// NP_725973;, nucleotide= NM_001144249; /// NM_137645; /// NM_166397;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005549
FlyMine data for FBgn0034517 /// FBgn0043536.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 14 of 4 1.90None
Head6 ± 22 of 4 1.70None
Eye6 ± 12 of 4 1.74None
Thoracicoabdominal ganglion7 ± 03 of 4 1.90None
Salivary gland15 ± 11 of 4 3.99Up
Crop19 ± 14 of 4 5.00Up
Midgut6 ± 10 of 4 1.60None
Tubule5 ± 01 of 4 1.40Up
Hindgut8 ± 12 of 4 2.20None
Heart3 ± 10 of 4 0.81None
Fat body9 ± 33 of 4 2.59None
Ovary1 ± 00 of 4 0.40None
Testis3 ± 10 of 4 0.80None
Male accessory glands2 ± 10 of 4 0.70None
Virgin spermatheca3 ± 00 of 4 0.90None
Mated spermatheca5 ± 02 of 4 1.41None
Adult carcass13 ± 31 of 4 3.50None
Larval CNS5 ± 14 of 4 1.56None
Larval Salivary gland6 ± 20 of 4 1.67None
Larval midgut6 ± 21 of 4 1.56None
Larval tubule7 ± 13 of 4 2.00None
Larval hindgut6 ± 11 of 4 1.73None
Larval fat body9 ± 11 of 4 2.40None
Larval trachea13 ± 34 of 4 3.58Up
Larval carcass63 ± 44 of 416.70Up
S2 cells (growing)4 ± 01 of 4 1.29None
Whole fly3 ± 21 of 4

Looking for FBgn0034517. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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