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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034518 through 18771 annotations produced 1 hits



/// (CG13430 /// CG18065):

Annotation Number : CG33008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034518 /// FBgn0034519
Gbrowse : chr2R:16437837-16439591 (-) // 100.0 //
Probeset : 1637174_s_at
Accessions : protein= NP_001027441; /// NP_001027442; /// NP_725975;, nucleotide= NM_001032270; /// NM_001032271; /// NM_166398;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0034518 /// FBgn0034519.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain177 ± 104 of 4 4.50Up
Head60 ± 64 of 4 1.50Up
Eye78 ± 44 of 4 2.00Up
Thoracicoabdominal ganglion120 ± 44 of 4 3.10Up
Salivary gland55 ± 34 of 4 1.41Up
Crop36 ± 24 of 4 0.90None
Midgut32 ± 14 of 4 0.80Down
Tubule30 ± 24 of 4 0.80Down
Hindgut37 ± 24 of 4 1.00None
Heart24 ± 34 of 4 0.62Down
Fat body18 ± 33 of 4 0.47Down
Ovary60 ± 14 of 4 1.50Up
Testis7 ± 01 of 4 0.20Down
Male accessory glands19 ± 23 of 4 0.50Down
Virgin spermatheca23 ± 24 of 4 0.59Down
Mated spermatheca23 ± 14 of 4 0.59Down
Adult carcass31 ± 14 of 4 0.80Down
Larval CNS65 ± 34 of 4 1.67Up
Larval Salivary gland37 ± 13 of 4 0.94None
Larval midgut29 ± 44 of 4 0.74None
Larval tubule73 ± 34 of 4 1.90Up
Larval hindgut26 ± 24 of 4 0.66Down
Larval fat body45 ± 54 of 4 1.20None
Larval trachea38 ± 84 of 4 0.97None
Larval carcass30 ± 34 of 4 0.78None
S2 cells (growing)22 ± 03 of 4 0.57Down
Whole fly39 ± 14 of 4

Looking for FBgn0034518. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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