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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034520 through 18771 annotations produced 1 hits


Annotation Number : CG13424
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034520
Gbrowse : chr2R:16444363-16447458 (+) // 100.0 //
Probeset : 1637413_at
Accessions : protein= NP_611491;, nucleotide= NM_137647;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0034520.
BDGP gene expression has embryonic in situ data for CG13424: 54 pix of staining in 4 body parts.
Homophila reports that CG13424 is a close match (7e-11) to human gene HOXD4;HOX4B (NP_055436), a gene associated with {Leukemia, acute lymphoblastic, susceptibility to} (3).
VDRC has 2 RNAi stocks for FBgn0034520 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 00 of 4 0.70None
Head6 11 of 4 0.50None
Eye7 10 of 4 0.62None
Thoracicoabdominal ganglion14 10 of 4 1.20None
Salivary gland22 50 of 4 1.94None
Crop11 30 of 4 1.00None
Midgut1 00 of 4 0.10None
Tubule3 00 of 4 0.30Down
Hindgut13 20 of 4 1.20None
Heart5 10 of 4 0.51None
Fat body6 50 of 4 0.53None
Ovary23 22 of 4 2.00None
Testis0 00 of 4 0.10None
Male accessory glands430 194 of 437.10Up
Virgin spermatheca6 20 of 4 0.52None
Mated spermatheca6 10 of 4 0.54None
Adult carcass2 00 of 4 0.20None
Larval CNS13 30 of 4 1.13None
Larval Salivary gland71 34 of 4 6.12Up
Larval midgut2 10 of 4 0.21None
Larval tubule4 00 of 4 0.40None
Larval hindgut3 00 of 4 0.28None
Larval fat body3 10 of 4 0.30None
Larval trachea4 30 of 4 0.37None
Larval carcass5 10 of 4 0.47None
S2 cells (growing)2 00 of 4 0.18None
Whole fly11 41 of 4

Looking for FBgn0034520. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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